197 lines
6.7 KiB
EmacsLisp
197 lines
6.7 KiB
EmacsLisp
|
|
;;; lsp-nextflow.el --- lsp-mode nextflow integration -*- lexical-binding: t; -*-
|
|||
|
|
|
|||
|
|
;; Copyright (C) 2024 Edmund Miller
|
|||
|
|
;; Copyright (C) 2024-2026 emacs-lsp maintainers
|
|||
|
|
|
|||
|
|
;; Author: Edmund Miller
|
|||
|
|
;; Keywords: lsp, nextflow, groovy
|
|||
|
|
|
|||
|
|
;; This program is free software; you can redistribute it and/or modify
|
|||
|
|
;; it under the terms of the GNU General Public License as published by
|
|||
|
|
;; the Free Software Foundation, either version 3 of the License, or
|
|||
|
|
;; (at your option) any later version.
|
|||
|
|
|
|||
|
|
;; This program is distributed in the hope that it will be useful,
|
|||
|
|
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|||
|
|
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|||
|
|
;; GNU General Public License for more details.
|
|||
|
|
|
|||
|
|
;; You should have received a copy of the GNU General Public License
|
|||
|
|
;; along with this program. If not, see <https://www.gnu.org/licenses/>.
|
|||
|
|
|
|||
|
|
;;; Commentary:
|
|||
|
|
|
|||
|
|
;; LSP Clients for the Nextflow Programming Language.
|
|||
|
|
|
|||
|
|
;;; Code:
|
|||
|
|
|
|||
|
|
(require 'lsp-mode)
|
|||
|
|
(require 'f)
|
|||
|
|
|
|||
|
|
(defgroup lsp-nextflow nil
|
|||
|
|
"LSP support for nextflow, using nextflow-language-server."
|
|||
|
|
:group 'lsp-mode
|
|||
|
|
:link '(url-link "https://github.com/nextflow-io/language-server"))
|
|||
|
|
|
|||
|
|
(defcustom lsp-nextflow-java-path "java"
|
|||
|
|
"Path of the java executable."
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:type 'string)
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-language-version "25.10"
|
|||
|
|
"Nextflow language version to be used by the language server."
|
|||
|
|
:type '(choice (const "26.04 (preview)") (const "25.10") (const "25.04") (const "24.10"))
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.languageVersion")
|
|||
|
|
|
|||
|
|
(defcustom lsp-nextflow-server-download-url
|
|||
|
|
(format "https://github.com/nextflow-io/language-server/releases/download/v%s/language-server-all.jar"
|
|||
|
|
lsp-nextflow-language-version)
|
|||
|
|
"Automatic download url for lsp-nextflow."
|
|||
|
|
:type 'string
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0"))
|
|||
|
|
|
|||
|
|
(defcustom lsp-nextflow-server-file
|
|||
|
|
(f-join lsp-server-install-dir "nextflow-language-server.jar")
|
|||
|
|
"The path to the file in which `lsp-nextflow' will be stored."
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:risky t
|
|||
|
|
:type 'file
|
|||
|
|
:package-version '(lsp-mode . "9.0.0"))
|
|||
|
|
|
|||
|
|
(defun lsp-nextflow-server-command ()
|
|||
|
|
"Startup command for Nextflow language server."
|
|||
|
|
`("java" "-jar" ,(expand-file-name lsp-nextflow-server-file)))
|
|||
|
|
|
|||
|
|
(lsp-dependency 'nextflow-lsp
|
|||
|
|
'(:system lsp-nextflow-server-file)
|
|||
|
|
`(:download :url lsp-nextflow-server-download-url
|
|||
|
|
:store-path lsp-nextflow-server-file))
|
|||
|
|
|
|||
|
|
;;
|
|||
|
|
;;; Settings
|
|||
|
|
|
|||
|
|
;; (lsp-generate-settings "~/src/nf-core/vscode-language-nextflow/package.json" 'lsp-nextflow)
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-debug nil
|
|||
|
|
"Enable debug logging and debug information in hover hints."
|
|||
|
|
:type 'boolean
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.debug")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-files-exclude [".git" ".nf-test" "work"]
|
|||
|
|
"Folders that should be excluded when scanning the workspace for Nextflow files."
|
|||
|
|
:type 'lsp-string-vector
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.files.exclude")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-formatting-harshil-alignment nil
|
|||
|
|
"Use the [Harshil Alignment™️](https://nf-co.re/docs/contributing/code_editors_and_styling/harshil_alignment) when formatting Nextflow scripts and config files.
|
|||
|
|
|
|||
|
|
*Note: not all rules are supported.*"
|
|||
|
|
:type 'boolean
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.formatting.harshilAlignment")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-java-home ""
|
|||
|
|
"Specify the folder path to the desired Java runtime.
|
|||
|
|
|
|||
|
|
Equivalent to the `JAVA_HOME` environment variable, i.e.
|
|||
|
|
the Java binary should be located at `$JAVA_HOME/bin/java`.
|
|||
|
|
Use this setting if the extension cannot find Java automatically."
|
|||
|
|
:type 'string
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.java.home")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-suppress-future-warnings t
|
|||
|
|
"Hide warnings for future changes, deprecations, and removals."
|
|||
|
|
:type 'boolean
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.suppressFutureWarnings")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-completion-extended nil
|
|||
|
|
"Provide auto-completions from outside the current script.
|
|||
|
|
|
|||
|
|
If an external completion is selected, it will be automatically
|
|||
|
|
included into the current script."
|
|||
|
|
:type 'boolean
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.completion.extended")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-completion-max-items 100
|
|||
|
|
"The maximum number of auto-completions to suggest at a time."
|
|||
|
|
:type 'number
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.completion.maxItems")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-error-reporting-mode "warnings"
|
|||
|
|
"Set the desired level of error reporting."
|
|||
|
|
:type '(choice (const "off") (const "errors") (const "warnings") (const "paranoid"))
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.errorReportingMode")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-formatting-mahesh-form nil
|
|||
|
|
"Place process outputs at the end of the process body when formatting Nextflow scripts."
|
|||
|
|
:type 'boolean
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.formatting.maheshForm")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-formatting-sort-declarations nil
|
|||
|
|
"Sort script declarations when formatting Nextflow scripts."
|
|||
|
|
:type 'boolean
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.formatting.sortDeclarations")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-telemetry-enabled nil
|
|||
|
|
"Enable usage data to be sent to Seqera.
|
|||
|
|
|
|||
|
|
See the welcome page for more information about what we do and do not collect."
|
|||
|
|
:type 'boolean
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.telemetry.enabled")
|
|||
|
|
|
|||
|
|
(lsp-defcustom lsp-nextflow-type-checking nil
|
|||
|
|
"Enable static type checking."
|
|||
|
|
:type 'boolean
|
|||
|
|
:group 'lsp-nextflow
|
|||
|
|
:package-version '(lsp-mode . "9.0.0")
|
|||
|
|
:lsp-path "nextflow.typeChecking")
|
|||
|
|
|
|||
|
|
;;
|
|||
|
|
;;; Client
|
|||
|
|
|
|||
|
|
(lsp-register-client
|
|||
|
|
(make-lsp-client
|
|||
|
|
;; FIXME
|
|||
|
|
;; :download-server-fn (lambda (_client callback error-callback _update?)
|
|||
|
|
;; (lsp-package-ensure 'nextflow-lsp callback error-callback))
|
|||
|
|
:new-connection (lsp-stdio-connection #'lsp-nextflow-server-command)
|
|||
|
|
:major-modes '(nextflow-mode)
|
|||
|
|
:multi-root t
|
|||
|
|
:activation-fn (lsp-activate-on "nextflow")
|
|||
|
|
:priority -1
|
|||
|
|
:initialized-fn (lambda (workspace)
|
|||
|
|
(with-lsp-workspace workspace
|
|||
|
|
(lsp--set-configuration
|
|||
|
|
(lsp-configuration-section "nextflow"))))
|
|||
|
|
;; TODO Handle preview dag
|
|||
|
|
:server-id 'nextflow-lsp))
|
|||
|
|
|
|||
|
|
(lsp-consistency-check lsp-nextflow)
|
|||
|
|
|
|||
|
|
(provide 'lsp-nextflow)
|
|||
|
|
;;; lsp-nextflow.el ends here
|